IL_23WI_138

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_138 not in the Motif Atlas

Homologous match to IL_6CZR_132

Geometric discrepancy: 0.2069

The information below is about IL_6CZR_132

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

23WI|1|a|C|504
23WI|1|a|G|505
23WI|1|a|G|506
23WI|1|a|C|507
23WI|1|a|U|508
23WI|1|a|A|509
23WI|1|a|A|510
23WI|1|a|C|511
*
23WI|1|a|G|540
23WI|1|a|G|541

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain l

Small ribosomal subunit protein uS12