IL_23WI_139
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 23WI|1|a|A|532, 23WI|1|a|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_23WI_139 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.3252
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
23WI|1|a|G|515
23WI|1|a|PSU|516
23WI|1|a|G|517
23WI|1|a|C|518
23WI|1|a|C|519
23WI|1|a|A|520
23WI|1|a|G|521
*
23WI|1|a|C|528
23WI|1|a|G|529
23WI|1|a|G|530
23WI|1|a|U|531
23WI|1|a|A|532
23WI|1|a|A|533
23WI|1|a|U|534
23WI|1|a|A|535
23WI|1|a|C|536
Current chains
- Chain a
- RNA (1539-MER)
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
Coloring options: