IL_23WI_145

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_145 not in the Motif Atlas

Geometric match to IL_8B0X_030

Geometric discrepancy: 0.0799

The information below is about IL_8B0X_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74641.4

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

23WI|1|a|G|654
23WI|1|a|A|655
*
23WI|1|a|U|751
23WI|1|a|G|752
23WI|1|a|A|753
23WI|1|a|C|754

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain h

Small ribosomal subunit protein uS8

Chain o

Small ribosomal subunit protein uS15