3D structure

PDB id
8B0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.55 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8B0X_030 not in the Motif Atlas
Geometric match to IL_4LFB_027
Geometric discrepancy: 0.0561
The information below is about IL_4LFB_027
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

8B0X|1|A|G|654
8B0X|1|A|A|655
*
8B0X|1|A|U|751
8B0X|1|A|G|752
8B0X|1|A|A|753
8B0X|1|A|C|754

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain O
30S ribosomal protein S15

Coloring options:


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