IL_23WI_155

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

23WI|1|a|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_155 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.2427

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

23WI|1|a|G|933
23WI|1|a|C|934
23WI|1|a|A|935
*
23WI|1|a|U|1380
23WI|1|a|U|1381
23WI|1|a|C|1382
23WI|1|a|C|1383
23WI|1|a|C|1384

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain g

Small ribosomal subunit protein uS7

Chain i

Small ribosomal subunit protein uS9