IL_23WI_173

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_173 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.1435

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

23WI|1|a|G|1401
23WI|1|a|4OC|1402
23WI|1|a|C|1403
23WI|1|a|C|1404
*
23WI|1|a|G|1497
23WI|1|a|UR3|1498
23WI|1|a|A|1499
23WI|1|a|A|1500
23WI|1|a|C|1501

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain l

Small ribosomal subunit protein uS12