IL_23WI_175

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_175 not in the Motif Atlas

Geometric match to IL_9H3G_236

Geometric discrepancy: 0.231

The information below is about IL_9H3G_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29925.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

23WI|1|a|5MC|1407
23WI|1|a|A|1408
23WI|1|a|C|1409
*
23WI|1|a|G|1491
23WI|1|a|A|1492
23WI|1|a|A|1493
23WI|1|a|G|1494

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain l

Small ribosomal subunit protein uS12