IL_28LN_012

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAC*GGA(PSU)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_012 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.207

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

28LN|1|A2|C|188
28LN|1|A2|U|189
28LN|1|A2|G|190
28LN|1|A2|A|191
28LN|1|A2|C|192
*
28LN|1|A2|G|207
28LN|1|A2|G|208
28LN|1|A2|A|209
28LN|1|A2|PSU|210
28LN|1|A2|G|211

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AI

40S ribosomal protein S8