IL_28LN_016

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

28LN|1|A2|U|361, 28LN|1|A2|C|399, 28LN|1|A2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|U|359
28LN|1|A2|A|360
28LN|1|A2|U|361
28LN|1|A2|C|362
28LN|1|A2|A|363
28LN|1|A2|A|364
*
28LN|1|A2|U|396
28LN|1|A2|G|397
28LN|1|A2|A|398
28LN|1|A2|C|399
28LN|1|A2|C|400
28LN|1|A2|A|401
28LN|1|A2|C|402
28LN|1|A2|G|403

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AI

40S ribosomal protein S8

Chain AL

Small ribosomal subunit protein uS17

Chain AX

Small ribosomal subunit protein uS12

Chain B5

Large subunit ribosomal RNA; LSU rRNA