IL_28LN_016
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 28LN|1|A2|U|361, 28LN|1|A2|C|399, 28LN|1|A2|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_016 not in the Motif Atlas
- Homologous match to IL_9PN5_159
- Geometric discrepancy: 0.1239
- The information below is about IL_9PN5_159
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.7
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 8
Unit IDs
28LN|1|A2|U|359
28LN|1|A2|A|360
28LN|1|A2|U|361
28LN|1|A2|C|362
28LN|1|A2|A|363
28LN|1|A2|A|364
*
28LN|1|A2|U|396
28LN|1|A2|G|397
28LN|1|A2|A|398
28LN|1|A2|C|399
28LN|1|A2|C|400
28LN|1|A2|A|401
28LN|1|A2|C|402
28LN|1|A2|G|403
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AI
- 40S ribosomal protein S8
- Chain AL
- Small ribosomal subunit protein uS17
- Chain AX
- Small ribosomal subunit protein uS12
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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