IL_28LN_018

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGG*CGAU(OMU)C

Length

9 nucleotides

Bulged bases

28LN|1|A2|OMU|428

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_018 not in the Motif Atlas

Homologous match to IL_9PN5_161

Geometric discrepancy: 0.2174

The information below is about IL_9PN5_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.4

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

28LN|1|A2|G|411
28LN|1|A2|G|412
28LN|1|A2|G|413
*
28LN|1|A2|C|424
28LN|1|A2|G|425
28LN|1|A2|A|426
28LN|1|A2|U|427
28LN|1|A2|OMU|428
28LN|1|A2|C|429

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4, X isoform

Chain AJ

40S ribosomal protein S9

Chain AX

Small ribosomal subunit protein uS12