IL_28LN_024

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

28LN|1|A2|C|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_024 not in the Motif Atlas

Geometric match to IL_5Y85_006

Geometric discrepancy: 0.313

The information below is about IL_5Y85_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

28LN|1|A2|G|535
28LN|1|A2|A|536
28LN|1|A2|C|537
*
28LN|1|A2|G|546
28LN|1|A2|G|547
28LN|1|A2|C|548
28LN|1|A2|C|549

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ae

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein