IL_28LN_027

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_027 not in the Motif Atlas

Homologous match to IL_9H3G_185

Geometric discrepancy: 0.0841

The information below is about IL_9H3G_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

28LN|1|A2|A|599
28LN|1|A2|G|600
28LN|1|A2|OMG|601
28LN|1|A2|G|602
28LN|1|A2|C|603
28LN|1|A2|A|604
28LN|1|A2|A|605
28LN|1|A2|G|606
*
28LN|1|A2|C|636
28LN|1|A2|U|637

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

40S ribosomal protein S2

Chain AJ

40S ribosomal protein S9

Chain Ae

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein