IL_28LN_036

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCU*G(OMC)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_036 not in the Motif Atlas

Geometric match to IL_5VCI_001

Geometric discrepancy: 0.1481

The information below is about IL_5VCI_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_81485.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

32

Unit IDs

28LN|1|A2|C|745
28LN|1|A2|C|746
28LN|1|A2|U|747
*
28LN|1|A2|G|796
28LN|1|A2|OMC|797
28LN|1|A2|G|798

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4, X isoform

Chain AH

40S ribosomal protein S7

Chain AL

Small ribosomal subunit protein uS17