IL_28LN_039

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AC*GAA(PSU)

Length

6 nucleotides

Bulged bases

28LN|1|A2|A|861

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_039 not in the Motif Atlas

Geometric match to IL_9DFE_073

Geometric discrepancy: 0.2264

The information below is about IL_9DFE_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

28LN|1|A2|A|802
28LN|1|A2|C|803
*
28LN|1|A2|G|860
28LN|1|A2|A|861
28LN|1|A2|A|862
28LN|1|A2|PSU|863

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AH

40S ribosomal protein S7

Chain AL

Small ribosomal subunit protein uS17

Chain AW

40S ribosomal protein S15a

Chain AX

Small ribosomal subunit protein uS12