IL_28LN_050
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 28LN|1|A2|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_050 not in the Motif Atlas
- Homologous match to IL_9H3G_202
- Geometric discrepancy: 0.1573
- The information below is about IL_9H3G_202
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
28LN|1|A2|G|952
28LN|1|A2|C|953
28LN|1|A2|U|954
28LN|1|A2|A|955
28LN|1|A2|G|956
*
28LN|1|A2|C|967
28LN|1|A2|U|968
28LN|1|A2|U|969
28LN|1|A2|G|970
28LN|1|A2|G|971
28LN|1|A2|A|972
28LN|1|A2|C|973
28LN|1|A2|C|974
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein S3a
- Chain AO
- 40S ribosomal protein S14
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: