IL_28LN_069

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

28LN|1|A2|C|1331, 28LN|1|A2|U|1494, 28LN|1|A2|G|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|U|1329
28LN|1|A2|G|1330
28LN|1|A2|C|1331
28LN|1|A2|A|1332
28LN|1|A2|U|1333
28LN|1|A2|G|1334
28LN|1|A2|G|1335
*
28LN|1|A2|U|1492
28LN|1|A2|C|1493
28LN|1|A2|U|1494
28LN|1|A2|G|1495
28LN|1|A2|U|1496
28LN|1|A2|G|1497
28LN|1|A2|A|1498
28LN|1|A2|U|1499
28LN|1|A2|G|1500

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S3

Chain AK

40S ribosomal protein S10

Chain AU

40S ribosomal protein S20

Chain Ad

40S ribosomal protein S29

Chain Af

Ubiquitin