IL_28LN_069
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 28LN|1|A2|C|1331, 28LN|1|A2|U|1494, 28LN|1|A2|G|1497
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_069 not in the Motif Atlas
- Homologous match to IL_9H3G_220
- Geometric discrepancy: 0.1205
- The information below is about IL_9H3G_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.2
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
28LN|1|A2|U|1329
28LN|1|A2|G|1330
28LN|1|A2|C|1331
28LN|1|A2|A|1332
28LN|1|A2|U|1333
28LN|1|A2|G|1334
28LN|1|A2|G|1335
*
28LN|1|A2|U|1492
28LN|1|A2|C|1493
28LN|1|A2|U|1494
28LN|1|A2|G|1495
28LN|1|A2|U|1496
28LN|1|A2|G|1497
28LN|1|A2|A|1498
28LN|1|A2|U|1499
28LN|1|A2|G|1500
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AD
- 40S ribosomal protein S3
- Chain AK
- 40S ribosomal protein S10
- Chain AU
- 40S ribosomal protein S20
- Chain Ad
- 40S ribosomal protein S29
- Chain Af
- Ubiquitin
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