IL_28LN_073

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_073 not in the Motif Atlas

Homologous match to IL_9H3G_224

Geometric discrepancy: 0.201

The information below is about IL_9H3G_224

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

28LN|1|A2|C|1363
28LN|1|A2|U|1364
28LN|1|A2|G|1365
*
28LN|1|A2|C|1374
28LN|1|A2|G|1375

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AR

40S ribosomal protein S17

Chain Aa

40S ribosomal protein S26