IL_28LN_074

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUGC*(OMG)AGG

Length

9 nucleotides

Bulged bases

28LN|1|A2|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_074 not in the Motif Atlas

Geometric match to IL_8GLP_337

Geometric discrepancy: 0.1428

The information below is about IL_8GLP_337

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

28LN|1|A2|C|1395
28LN|1|A2|A|1396
28LN|1|A2|U|1397
28LN|1|A2|G|1398
28LN|1|A2|C|1399
*
28LN|1|A2|OMG|1447
28LN|1|A2|A|1448
28LN|1|A2|G|1449
28LN|1|A2|G|1450

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AQ

40S ribosomal protein S16

Chain AR

40S ribosomal protein S17

Chain AU

40S ribosomal protein S20

Chain Ag

Receptor of activated protein C kinase 1