IL_28LN_075

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

28LN|1|A2|U|1404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_075 not in the Motif Atlas

Homologous match to IL_9PN5_213

Geometric discrepancy: 0.3445

The information below is about IL_9PN5_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.5

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

5

Unit IDs

28LN|1|A2|A|1402
28LN|1|A2|C|1403
28LN|1|A2|U|1404
28LN|1|A2|A|1405
*
28LN|1|A2|U|1441
28LN|1|A2|OMU|1442
28LN|1|A2|C|1443
28LN|1|A2|U|1444

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AQ

40S ribosomal protein S16

Chain AU

40S ribosomal protein S20

Chain Ag

Receptor of activated protein C kinase 1