IL_28LN_080
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 28LN|1|A2|G|1552, 28LN|1|A2|C|1553, 28LN|1|A2|A|1580, 28LN|1|A2|C|1581
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_080 not in the Motif Atlas
- Homologous match to IL_9SUM_213
- Geometric discrepancy: 0.5963
- The information below is about IL_9SUM_213
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12629.2
- Basepair signature
- cWW-tSS-L-R-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
28LN|1|A2|G|1550
28LN|1|A2|U|1551
28LN|1|A2|G|1552
28LN|1|A2|C|1553
28LN|1|A2|C|1554
28LN|1|A2|U|1555
28LN|1|A2|A|1556
28LN|1|A2|C|1557
28LN|1|A2|C|1558
*
28LN|1|A2|G|1577
28LN|1|A2|U|1578
28LN|1|A2|A|1579
28LN|1|A2|A|1580
28LN|1|A2|C|1581
28LN|1|A2|C|1582
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AD
- 40S ribosomal protein S3
- Chain AU
- 40S ribosomal protein S20
- Chain Ad
- 40S ribosomal protein S29
Coloring options: