IL_28LN_087

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_087 not in the Motif Atlas

Homologous match to IL_9H3G_237

Geometric discrepancy: 0.3436

The information below is about IL_9H3G_237

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

28LN|1|A2|U|1714
28LN|1|A2|A|1715
28LN|1|A2|C|1716
*
28LN|1|A2|G|1817
28LN|1|A2|A|1818
28LN|1|A2|A|1819

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AX

Small ribosomal subunit protein uS12

Chain Ah

60S ribosomal protein L41

Chain B5

Large subunit ribosomal RNA; LSU rRNA