IL_28LN_095

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_095 not in the Motif Atlas

Geometric match to IL_9UJU_003

Geometric discrepancy: 0.1894

The information below is about IL_9UJU_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57267.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

28LN|1|A2|C|1751
28LN|1|A2|C|1752
*
28LN|1|A2|G|1780
28LN|1|A2|A|1781
28LN|1|A2|G|1782

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain BW

60S ribosomal protein L24