IL_28LN_099
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_099 not in the Motif Atlas
- Homologous match to IL_8GLP_003
- Geometric discrepancy: 0.1004
- The information below is about IL_8GLP_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_19025.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
28LN|1|B5|G|16
28LN|1|B5|A|17
28LN|1|B5|C|18
*
28LN|1|B8|G|139
28LN|1|B8|C|140
28LN|1|B8|C|141
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BN
- 60S ribosomal protein L15
- Chain BX
- 60S ribosomal protein L23a
- Chain Bh
- 60S ribosomal protein L35
Coloring options: