IL_28LN_103
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAU*ACAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 28LN|1|B5|G|119, 28LN|1|B5|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_103 not in the Motif Atlas
- Homologous match to IL_8GLP_287
- Geometric discrepancy: 0.1188
- The information below is about IL_8GLP_287
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
28LN|1|B5|C|118
28LN|1|B5|G|119
28LN|1|B5|A|120
28LN|1|B5|A|121
28LN|1|B5|U|122
*
28LN|1|B5|A|147
28LN|1|B5|C|148
28LN|1|B5|A|149
28LN|1|B5|U|150
28LN|1|B5|G|151
28LN|1|B5|U|152
28LN|1|B5|G|153
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BG
- 60S ribosomal protein L7a
- Chain BN
- 60S ribosomal protein L15
- Chain Bh
- 60S ribosomal protein L35
Coloring options: