IL_28LN_104
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 28LN|1|B5|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_104 not in the Motif Atlas
- Homologous match to IL_8GLP_009
- Geometric discrepancy: 0.36
- The information below is about IL_8GLP_009
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 72
Unit IDs
28LN|1|B5|C|125
28LN|1|B5|C|126
*
28LN|1|B5|G|142
28LN|1|B5|C|143
28LN|1|B5|G|144
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BG
- 60S ribosomal protein L7a
- Chain BN
- 60S ribosomal protein L15
- Chain BX
- 60S ribosomal protein L23a
- Chain Bh
- 60S ribosomal protein L35
Coloring options: