IL_28LN_108
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_108 not in the Motif Atlas
- Geometric match to IL_7L0Z_004
- Geometric discrepancy: 0.1961
- The information below is about IL_7L0Z_004
- Detailed Annotation
- Stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_77710.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 27
Unit IDs
28LN|1|B5|C|195
28LN|1|B5|C|196
*
28LN|1|B5|G|244
28LN|1|B5|C|245
28LN|1|B5|G|246
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S ribosomal protein L4
- Chain BY
- 60S ribosomal protein L26
Coloring options: