IL_28LN_125

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

28LN|1|B5|U|513

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_125 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.2066

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

28LN|1|B5|U|512
28LN|1|B5|U|513
28LN|1|B5|U|514
28LN|1|B5|C|515
*
28LN|1|B5|G|646
28LN|1|B5|G|647

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

60S ribosomal protein L13

Chain Ba

Large ribosomal subunit protein uL15