IL_28LN_152

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_152 not in the Motif Atlas

Homologous match to IL_9PN5_031

Geometric discrepancy: 0.0947

The information below is about IL_9PN5_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

28LN|1|B5|G|1585
28LN|1|B5|G|1586
28LN|1|B5|U|1587
28LN|1|B5|C|1588
*
28LN|1|B5|G|1604
28LN|1|B5|U|1605
28LN|1|B5|C|1606

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bj

Large ribosomal subunit protein eL37