IL_28LN_161
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCGAA(PSU)*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 28LN|1|B5|G|1740, 28LN|1|B5|A|1786, 28LN|1|B5|A|1787
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_161 not in the Motif Atlas
- Homologous match to IL_9AXU_039
- Geometric discrepancy: 0.1678
- The information below is about IL_9AXU_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.4
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
28LN|1|B5|G|1738
28LN|1|B5|C|1739
28LN|1|B5|G|1740
28LN|1|B5|A|1741
28LN|1|B5|A|1742
28LN|1|B5|PSU|1743
*
28LN|1|B5|A|1785
28LN|1|B5|A|1786
28LN|1|B5|A|1787
28LN|1|B5|C|1788
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- 60S ribosomal protein L5
- Chain BI
- 60S ribosomal protein L10
- Chain BT
- 60S ribosomal protein L21
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