IL_28LN_162

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUA*(PSU)(PSU)CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_162 not in the Motif Atlas

Homologous match to IL_9PN5_040

Geometric discrepancy: 0.2352

The information below is about IL_9PN5_040

Detailed Annotation

Tandem non-canonical cWW pairs; U in syn

Broad Annotation

Tandem non-canonical cWW pairs; U in syn

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

28LN|1|B5|A|1745
28LN|1|B5|U|1746
28LN|1|B5|U|1747
28LN|1|B5|A|1748
*
28LN|1|B5|PSU|1780
28LN|1|B5|PSU|1781
28LN|1|B5|C|1782
28LN|1|B5|U|1783

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

60S ribosomal protein L5

Chain BI

60S ribosomal protein L10