IL_28LN_166

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AC(PSU)*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_166 not in the Motif Atlas

Homologous match to IL_9AXU_044

Geometric discrepancy: 0.1452

The information below is about IL_9AXU_044

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

28LN|1|B5|A|1857
28LN|1|B5|C|1858
28LN|1|B5|PSU|1859
*
28LN|1|B5|A|1873
28LN|1|B5|C|1874
28LN|1|B5|U|1875

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BF

Large ribosomal subunit protein uL30

Chain Bb

Large ribosomal subunit protein eL29