IL_28LN_182

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_182 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.0608

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

28LN|1|B5|G|2357
28LN|1|B5|U|2358
28LN|1|B5|A|2359
28LN|1|B5|G|2360
28LN|1|B5|U|2361
28LN|1|B5|A2M|2362
28LN|1|B5|OMG|2363
*
28LN|1|B5|C|3857
28LN|1|B5|G|3858
28LN|1|B5|A|3859
28LN|1|B5|A|3860
28LN|1|B5|A|3861
28LN|1|B5|C|3862

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BP

60S ribosomal protein L17