IL_28LN_205

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

28LN|1|B5|OMC|3700

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_205 not in the Motif Atlas

Homologous match to IL_9AXU_080

Geometric discrepancy: 0.0851

The information below is about IL_9AXU_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55206.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

28LN|1|B5|C|3699
28LN|1|B5|OMC|3700
28LN|1|B5|A|3701
28LN|1|B5|G|3702
*
28LN|1|B5|C|3748
28LN|1|B5|G|3749

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

Large ribosomal subunit protein uL2