IL_28LN_213

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

28LN|1|B5|A|4384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_213 not in the Motif Atlas

Homologous match to IL_9H3G_103

Geometric discrepancy: 0.1404

The information below is about IL_9H3G_103

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

28LN|1|B5|G|3915
28LN|1|B5|A|3916
*
28LN|1|B5|U|4383
28LN|1|B5|A|4384
28LN|1|B5|C|4385
28LN|1|B5|C|4386

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B1

Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form

Chain BA

Large ribosomal subunit protein uL2