IL_28LN_225

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

28LN|1|B5|U|4436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_225 not in the Motif Atlas

Homologous match to IL_9H3G_119

Geometric discrepancy: 0.3089

The information below is about IL_9H3G_119

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

28LN|1|B5|G|4404
28LN|1|B5|U|4405
28LN|1|B5|G|4406
*
28LN|1|B5|U|4434
28LN|1|B5|U|4435
28LN|1|B5|U|4436
28LN|1|B5|U|4437
28LN|1|B5|U|4438

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3

Chain BI

60S ribosomal protein L10