IL_28LN_238

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_238 not in the Motif Atlas

Homologous match to IL_9AXU_109

Geometric discrepancy: 0.1225

The information below is about IL_9AXU_109

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.6

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

28LN|1|B5|C|4595
28LN|1|B5|U|4596
28LN|1|B5|C|4597
28LN|1|B5|A|4598
28LN|1|B5|G|4599
28LN|1|B5|U|4600
28LN|1|B5|A|4601
28LN|1|B5|C|4602
*
28LN|1|B5|G|4607
28LN|1|B5|G|4608
28LN|1|B5|A|4609
28LN|1|B5|A|4610
28LN|1|B5|C|4611
28LN|1|B5|C|4612
28LN|1|B5|G|4613

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3

Chain BH

60S ribosomal protein L9

Chain BV

60S ribosomal protein L23

Chain Bm

Ubiquitin-60S ribosomal protein L40