IL_28LN_240

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

28LN|1|B5|U|4633, 28LN|1|B5|PSU|4635

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_240 not in the Motif Atlas

Homologous match to IL_8GLP_318

Geometric discrepancy: 0.1836

The information below is about IL_8GLP_318

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43276.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

5

Unit IDs

28LN|1|B5|U|4631
28LN|1|B5|G|4632
28LN|1|B5|U|4633
28LN|1|B5|A|4634
28LN|1|B5|PSU|4635
28LN|1|B5|OMG|4636
*
28LN|1|B5|C|4661
28LN|1|B5|G|4662
28LN|1|B5|A|4663
28LN|1|B5|A|4664
28LN|1|B5|G|4665

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3

Chain BW

60S ribosomal protein L24

Chain Bd

60S ribosomal protein L31