IL_28LN_247
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_247 not in the Motif Atlas
- Geometric match to IL_1ZH5_001
- Geometric discrepancy: 0.1541
- The information below is about IL_1ZH5_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
28LN|1|B5|G|4754
28LN|1|B5|C|4755
28LN|1|B5|C|4756
*
28LN|1|B5|G|4876
28LN|1|B5|C|4877
28LN|1|B5|C|4878
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BE
- Large ribosomal subunit protein eL6
- Chain BM
- 60S ribosomal protein L14
- Chain BO
- 60S ribosomal protein L13a
- Chain BS
- 60S ribosomal protein L18a
- Chain Bf
- 60S ribosomal protein L35a
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