IL_28LN_253

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_253 not in the Motif Atlas

Homologous match to IL_8GLP_173

Geometric discrepancy: 0.1568

The information below is about IL_8GLP_173

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

28LN|1|B5|G|4991
28LN|1|B5|G|4992
28LN|1|B5|G|4993
*
28LN|1|B5|C|5056
28LN|1|B5|A|5057
28LN|1|B5|C|5058

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3

Chain Bd

60S ribosomal protein L31