IL_28LN_260

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAACGCG*CUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_260 not in the Motif Atlas

Geometric match to IL_8QYX_166

Geometric discrepancy: 0.1288

The information below is about IL_8QYX_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41504.2

Basepair signature

cWW-L-cSW-L-cSW-L-cSH-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

28LN|1|B7|G|21
28LN|1|B7|A|22
28LN|1|B7|A|23
28LN|1|B7|C|24
28LN|1|B7|G|25
28LN|1|B7|C|26
28LN|1|B7|G|27
*
28LN|1|B7|C|52
28LN|1|B7|U|53
28LN|1|B7|A|54
28LN|1|B7|A|55
28LN|1|B7|G|56
28LN|1|B7|C|57

Current chains

Chain B7

5S rRNA

Nearby chains

Chain BD

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L11