IL_28LN_264

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_264 not in the Motif Atlas

Homologous match to IL_7A0S_107

Geometric discrepancy: 0.2251

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01334.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

23

Unit IDs

28LN|1|B7|U|79
28LN|1|B7|U|80
28LN|1|B7|G|81
*
28LN|1|B7|C|95
28LN|1|B7|U|96
28LN|1|B7|G|97

Current chains

Chain B7

5S rRNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BF

Large ribosomal subunit protein uL30

Chain BS

60S ribosomal protein L18a