IL_28UH_032

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

28UH|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UH_032 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1788

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

28UH|1|A|U|662
28UH|1|A|A|663
28UH|1|A|G|664
28UH|1|A|A|665
28UH|1|A|G|666
*
28UH|1|A|U|740
28UH|1|A|G|741
28UH|1|A|G|742
28UH|1|A|A|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS6, fully modified isoform

Chain O

Small ribosomal subunit protein uS15

Chain R

Small ribosomal subunit protein bS18