IL_28UH_034
3D structure
- PDB id
- 28UH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 28UH|1|A|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UH_034 not in the Motif Atlas
- Geometric match to IL_8B0X_034
- Geometric discrepancy: 0.0447
- The information below is about IL_8B0X_034
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
28UH|1|A|U|684
28UH|1|A|G|685
28UH|1|A|U|686
28UH|1|A|A|687
28UH|1|A|G|688
*
28UH|1|A|C|699
28UH|1|A|G|700
28UH|1|A|U|701
28UH|1|A|A|702
28UH|1|A|G|703
28UH|1|A|A|704
28UH|1|A|G|705
28UH|1|A|A|706
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- Small ribosomal subunit protein uS11
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: