IL_28UH_128
3D structure
- PDB id
- 28UH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 28UH|1|a|G|1699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UH_128 not in the Motif Atlas
- Homologous match to IL_7A0S_063
- Geometric discrepancy: 0.1041
- The information below is about IL_7A0S_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.3
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
28UH|1|a|C|1686
28UH|1|a|G|1687
28UH|1|a|U|1688
28UH|1|a|A|1689
28UH|1|a|A|1690
28UH|1|a|C|1691
*
28UH|1|a|G|1696
28UH|1|a|G|1697
28UH|1|a|A|1698
28UH|1|a|G|1699
28UH|1|a|A|1700
28UH|1|a|A|1701
28UH|1|a|G|1702
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: