IL_28UI_032
3D structure
- PDB id
- 28UI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UAGAG*UGGA
- Length
- 9 nucleotides
- Bulged bases
- 28UI|1|A|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UI_032 not in the Motif Atlas
- Homologous match to IL_6CZR_141
- Geometric discrepancy: 0.1713
- The information below is about IL_6CZR_141
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
28UI|1|A|U|662
28UI|1|A|A|663
28UI|1|A|G|664
28UI|1|A|A|665
28UI|1|A|G|666
*
28UI|1|A|U|740
28UI|1|A|G|741
28UI|1|A|G|742
28UI|1|A|A|743
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein bS6, fully modified isoform
- Chain O
- Small ribosomal subunit protein uS15
- Chain R
- Small ribosomal subunit protein bS18
- Chain U
- Small ribosomal subunit protein bS21
Coloring options: