IL_28UL_062
3D structure
- PDB id
- 28UL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UL_062 not in the Motif Atlas
- Geometric match to IL_8B0X_062
- Geometric discrepancy: 0.2054
- The information below is about IL_8B0X_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.3
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
28UL|1|A|A|1430
28UL|1|A|A|1431
28UL|1|A|G|1432
28UL|1|A|A|1433
28UL|1|A|A|1434
28UL|1|A|G|1435
*
28UL|1|A|C|1466
28UL|1|A|C|1467
28UL|1|A|A|1468
28UL|1|A|C|1469
28UL|1|A|U|1470
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain T
- Small ribosomal subunit protein bS20
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain j
- Large ribosomal subunit protein uL14
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: