IL_28UM_069
3D structure
- PDB id
- 28UM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 28UM|1|a|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UM_069 not in the Motif Atlas
- Homologous match to IL_7A0S_004
- Geometric discrepancy: 0.4457
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
28UM|1|a|G|81
28UM|1|a|U|82
28UM|1|a|A|83
28UM|1|a|A|84
28UM|1|a|G|85
*
28UM|1|a|C|97
28UM|1|a|G|98
28UM|1|a|U|99
28UM|1|a|U|100
28UM|1|a|A|101
28UM|1|a|U|102
28UM|1|a|A|103
28UM|1|a|A|104
28UM|1|a|C|105
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain t
- Large ribosomal subunit protein uL24
- Chain x
- Large ribosomal subunit protein uL29
Coloring options: