IL_28UM_164

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

28UM|1|a|U|2689, 28UM|1|a|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UM_164 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1836

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

28UM|1|a|U|2687
28UM|1|a|G|2688
28UM|1|a|U|2689
28UM|1|a|U|2690
28UM|1|a|C|2691
*
28UM|1|a|G|2718
28UM|1|a|G|2719
28UM|1|a|U|2720
28UM|1|a|A|2721
28UM|1|a|G|2722

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19