IL_28UM_175
3D structure
- PDB id
- 28UM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UM_175 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.1047
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
28UM|1|b|C|71
28UM|1|b|G|72
28UM|1|b|A|73
28UM|1|b|U|74
28UM|1|b|G|75
28UM|1|b|G|76
28UM|1|b|U|77
28UM|1|b|A|78
28UM|1|b|G|79
*
28UM|1|b|C|97
28UM|1|b|G|98
28UM|1|b|A|99
28UM|1|b|G|100
28UM|1|b|A|101
28UM|1|b|G|102
28UM|1|b|U|103
28UM|1|b|A|104
28UM|1|b|G|105
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
- Chain u
- Large ribosomal subunit protein bL25
- Chain y
- Large ribosomal subunit protein uL30
Coloring options: