IL_28ZX_035
3D structure
- PDB id
- 28ZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 48S PIC with mRNA (Kozak_1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 28ZX|1|S2|A|628, 28ZX|1|S2|U|630, 28ZX|1|S2|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28ZX_035 not in the Motif Atlas
- Homologous match to IL_9PN5_173
- Geometric discrepancy: 0.1755
- The information below is about IL_9PN5_173
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
28ZX|1|S2|G|611
28ZX|1|S2|U|612
28ZX|1|S2|G|613
28ZX|1|S2|C|614
28ZX|1|S2|C|615
28ZX|1|S2|A|616
28ZX|1|S2|G|617
*
28ZX|1|S2|C|624
28ZX|1|S2|G|625
28ZX|1|S2|G|626
28ZX|1|S2|U|627
28ZX|1|S2|A|628
28ZX|1|S2|A|629
28ZX|1|S2|U|630
28ZX|1|S2|U|631
28ZX|1|S2|C|632
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain B
- mRNA_Kozak
- Chain H
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain SD
- 40S ribosomal protein S3
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
Coloring options: